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Humanized rat catechol O-methyltransferase in complex with single conformation of 5-(4-fluorophenyl)-2,3-dihydroxy-N-[2-(3-pyridin-4- yl-1H-1,2,4-triazol-5-YL)ETHYL]BENZAMIDE at 1.24A

Analyse Humanized rat catechol O-methyltransferase in complex with single conformation… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5P93
Type
protein
Length
213 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Catechol O-methyltransferase
EC
2.1.1.6
UniProt
P22734
Ligands
76S, MG, CL, SO4
Pockets
1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACatechol O-methyltransferase (EC 2.1.1.6)protein21347% helix, 20% strandP22734

Ligands and binding sites

  • 76S · 5-(4-fluorophenyl)-2,3-dihydroxy-N-[2-(3-pyridin-4-yl-1H-1,2,4-triazol-5-yl)ethyl]benzamide · ligand · chains A
  • MG · Magnesium ion · metal · chains A
  • CL · Chloride ion · ion · 2 copies · chains A
  • SO4 · Sulfate ion · ion · chains A
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11260.540.8231CL, 76S

Compared structures

  • 5P93 · humanized rat catechol O-methyltransferase in complex with single conformation of… · the same entry in another collection · chain A against A, TM-score 1.00
  • P22734 · AlphaFold monomer V2.0 prediction for catechol O-methyltransferase (P22734) · a predicted model of the same protein · chain A against A, TM-score 1.00

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