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Structure of bacillus subtilis yxko, a member of the UPF0031 family and a putative kinase

Analyse Structure of bacillus subtilis yxko, a member of the UPF0031 family and a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1KYH
Type: protein
Length: 268 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical 29.9 kda protein in sigy-cydd intergenic region
UniProt: P94368
Pockets: 2 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical 29.9 kda protein in sigy-cydd intergenic region	protein	268	45% helix, 13% strand	P94368

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.48	0.82	19	empty
2	64	0.36	0.78	19	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

1KYH · Structure of Bacillus subtilis YxkO, a Member of the UPF0031 Family and a Putative Kinase · the same entry in another collection · chain A against A, TM-score 1.00
P94368 · AlphaFold monomer V2.0 prediction for ADP-dependent (S)-NAD(P)H-hydrate dehydratase… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P94368
Elsewhere: RCSB PDB 1KYH · PDBe 1KYH · UniProt P94368

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