Research workbench
Outer-membrane expressed ompt of vibrio cholerae
Analyse Outer-membrane expressed ompt of vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OYK
- Type
- protein
- Length
- 319 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gram-negative porin family protein
- UniProt
- O86021
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 61% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gram-negative porin family protein | protein | 319 | 2% helix, 61% strand | O86021 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 181 | 0.66 | 0.86 | 31 | empty |
| 2 | 438 | 0.58 | 0.74 | 55 | empty |
| 3 | 248 | 0.53 | 0.76 | 34 | empty |
| 4 | 50 | 0.28 | 0.75 | 14 | empty |
Compared structures
- 5OYK · Outer-membrane expressed OmpT of Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O86021
- Elsewhere: RCSB PDB 5OYK · PDBe 5OYK · UniProt O86021
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