Research workbench

Thiobacillus denitrificans bph

Analyse Thiobacillus denitrificans bph in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OVS
Type: protein
Length: 2,593 residues
Chains: 14
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bph
Pockets: 20 · best druggability 0.71

Structure

x-ray diffraction · 3 distinct chains · 30% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, L, M, N	Bph	protein	185	30% helix, 31% strand	—
J	Bph	protein	186	30% helix, 30% strand	—
K	Bph	protein	187	29% helix, 29% strand	—

Pockets

20 pockets found on a 1 Å grid, 19 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	710	0.71	0.78	98	empty
2	287	0.58	0.78	58	empty
3	228	0.57	0.79	34	empty
4	206	0.56	0.79	30	empty
5	240	0.55	0.78	33	empty

Interfaces

28 interfaces between chains.

B–C · 1202 Å² buried · 22 hydrogen bonds · protein-protein
E–F · 1201 Å² buried · 20 hydrogen bonds · protein-protein
D–E · 1201 Å² buried · 25 hydrogen bonds · protein-protein
M–N · 1200 Å² buried · 24 hydrogen bonds · protein-protein
H–N · 1198 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

5OVS · Thiobacillus denitrificans BPH · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5OVS · PDBe 5OVS

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.