Research workbench
Solution structure of the CDC13 DNA-binding domain in a complex with single-stranded telomeric DNA (DNA structure not modeled)
Analyse Solution structure of the CDC13 DNA-binding domain in a complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KXL
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division control protein 13
- UniProt
- P32797
- Pockets
- 3 · best druggability 0.67
Structure
solution nmr · 1 distinct chain · 25% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell division control protein 13 | protein | 187 | 25% helix, 19% strand | P32797 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.67 | 0.90 | 24 | empty |
| 2 | 140 | 0.53 | 0.80 | 20 | empty |
| 3 | 101 | 0.41 | 0.77 | 16 | empty |
Compared structures
- 1KXL · Solution Structure of the Cdc13 DNA-binding Domain in a Complex with Single-Stranded… · the same entry in another collection · chain A against A, TM-score 1.00
- P32797 · AlphaFold monomer V2.0 prediction for cell division control protein 13 (P32797) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32797
- Elsewhere: RCSB PDB 1KXL · PDBe 1KXL · UniProt P32797
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