Research workbench
Crystal structure of a RNA molecule containing domain 5 and 6 of the yeast AI5G group II self-splicing intron
Analyse Crystal structure of a RNA molecule containing domain 5 and 6 of the yeast AI5G… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KXK
- Type
- RNA
- Length
- 70 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AI5G group II self-splicing intron
- Ligands
- MG
- Pockets
- 3 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AI5G group II self-splicing intron | rna | 70 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.46 | 0.72 | 28 | empty |
| 2 | 183 | 0.39 | 0.72 | 19 | empty |
| 3 | 54 | 0.27 | 0.75 | 11 | empty |
Compared structures
- 1KXK · Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KXK · PDBe 1KXK
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