Research workbench
Bacillus megaterium porphobilinogen deaminase D82A mutant
Analyse Bacillus megaterium porphobilinogen deaminase D82A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OV4
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Porphobilinogen deaminase
- EC
- 2.5.1.61
- UniProt
- Q8GCA8
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Porphobilinogen deaminase (EC 2.5.1.61) | protein | 289 | 36% helix, 24% strand | Q8GCA8 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.66 | 0.80 | 42 | empty |
| 2 | 160 | 0.44 | 0.75 | 19 | empty |
| 3 | 51 | 0.37 | 0.81 | 14 | empty |
Compared structures
- 5OV4 · Bacillus megaterium porphobilinogen deaminase D82A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8GCA8
- Elsewhere: RCSB PDB 5OV4 · PDBe 5OV4 · UniProt Q8GCA8
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