Research workbench
Structure of caprine serum albumin in orthorhombic crystal system
Analyse Structure of caprine serum albumin in orthorhombic crystal system in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ORI
- Type
- protein
- Length
- 583 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Albumin
- UniProt
- B3VHM9
- Pockets
- 8 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Albumin | protein | 583 | 72% helix, 0% strand | B3VHM9 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 550 | 0.82 | 0.88 | 68 | empty |
| 2 | 495 | 0.76 | 0.83 | 46 | empty |
| 3 | 273 | 0.68 | 0.83 | 30 | empty |
| 4 | 95 | 0.68 | 0.92 | 22 | empty |
| 5 | 101 | 0.53 | 0.83 | 17 | empty |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
- 5ORI · Structure of caprine serum albumin in orthorhombic crystal system · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3VHM9
- Elsewhere: RCSB PDB 5ORI · PDBe 5ORI · UniProt B3VHM9
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