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Bama structure of salmonella enterica

Analyse Bama structure of salmonella enterica in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OR1
Type: protein
Length: 380 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein assembly factor bama
UniProt: Q8ZRP0
Pockets: 4 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein assembly factor bama	protein	380	4% helix, 47% strand	Q8ZRP0

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	531	0.66	0.77	51	empty
2	316	0.60	0.78	43	empty
3	112	0.48	0.79	17	empty
4	61	0.44	0.83	20	empty

Compared structures

5OR1 · BamA structure of Salmonella enterica · the same entry in another collection · chain A against A, TM-score 1.00
Q8ZRP0 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bama (Q8ZRP0) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8ZRP0
Elsewhere: RCSB PDB 5OR1 · PDBe 5OR1 · UniProt Q8ZRP0

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