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Crystal structure of serratia marcescens chix (used as mr model for superior pdb 5OPZ)

Analyse Crystal structure of serratia marcescens chix (used as mr model for superior… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OQ1
Type: protein
Length: 266 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chix
UniProt: A0A0U7UVX7
Ligands: ZN, CL
Pockets: 4 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Chix	protein	133	44% helix, 14% strand	A0A0U7UVX7

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	107	0.49	0.81	19	empty
2	142	0.47	0.77	23	empty
3	84	0.38	0.77	22	empty
4	123	0.36	0.73	18	empty

Interfaces

1 interface between chains.

A–B · 1004 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

5OQ1 · Crystal structure of Serratia marcescens ChiX (used as MR model for superior PDB 5OPZ) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0U7UVX7
Elsewhere: RCSB PDB 5OQ1 · PDBe 5OQ1 · UniProt A0A0U7UVX7

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