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Structure of the hantaan virus gn glycoprotein ectodomain

Analyse Structure of the hantaan virus gn glycoprotein ectodomain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OPG
Type: protein
Length: 334 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Envelope glycoprotein gn
UniProt: A0A077D153
Ligands: NAG, SO4
Pockets: 5 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Envelope glycoprotein gn	protein	334	12% helix, 46% strand	A0A077D153

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	160	0.54	0.80	27	empty
2	119	0.52	0.81	23	empty
3	140	0.47	0.77	22	GOL
4	66	0.33	0.75	15	empty
5	63	0.29	0.74	19	empty

Modifications

Observed in the structure: 7 disulfide, 1 glycan (disulfide, N-glycosylation).

Compared structures

5OPG · Structure of the Hantaan virus Gn glycoprotein ectodomain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A077D153
Elsewhere: RCSB PDB 5OPG · PDBe 5OPG · UniProt A0A077D153

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