Research workbench
Structure of the rift valley fever virus nss protein core domain
Analyse Structure of the rift valley fever virus nss protein core domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OOO
- Type
- protein
- Length
- 318 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-structural protein ns-S
- UniProt
- A2SZX2
- Pockets
- 4 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-structural protein ns-S | protein | 166 | 63% helix, 0% strand | A2SZX2 |
| B | Non-structural protein ns-S | protein | 152 | 62% helix, 0% strand | A2SZX2 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.37 | 0.79 | 12 | empty |
| 2 | 78 | 0.37 | 0.77 | 12 | empty |
| 3 | 59 | 0.36 | 0.78 | 12 | empty |
| 4 | 53 | 0.25 | 0.72 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 305 Ų buried · 0 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2SZX2
- Elsewhere: RCSB PDB 5OOO · PDBe 5OOO · UniProt A2SZX2
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