Research workbench
Structure of the hmpv P oligomerization domain at 1.6 a
Analyse Structure of the hmpv P oligomerization domain at 1.6 a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OIX
- Type
- protein
- Length
- 209 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoprotein
- UniProt
- Q91KZ5
Structure
x-ray diffraction · 6 distinct chains · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | Phosphoprotein | protein | 26 | 81% helix, 0% strand | Q91KZ5 |
| B | Phosphoprotein | protein | 25 | 88% helix, 0% strand | Q91KZ5 |
| C | Phosphoprotein | protein | 28 | 79% helix, 0% strand | Q91KZ5 |
| D, H | Phosphoprotein | protein | 24 | 83% helix, 0% strand | Q91KZ5 |
| F | Phosphoprotein | protein | 27 | 85% helix, 0% strand | Q91KZ5 |
| G | Phosphoprotein | protein | 29 | 72% helix, 0% strand | Q91KZ5 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
13 interfaces between chains.
- A–B · 703 Ų buried · 4 hydrogen bonds · protein-protein
- E–F · 653 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 638 Ų buried · 5 hydrogen bonds · protein-protein
- C–D · 622 Ų buried · 3 hydrogen bonds · protein-protein
- G–H · 616 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5OIX · Structure of the HMPV P oligomerization domain at 1.6 A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91KZ5
- Elsewhere: RCSB PDB 5OIX · PDBe 5OIX · UniProt Q91KZ5
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