Research workbench
Legionella pneumophila ridl N-terminal domain lacking beta hairpin
Analyse Legionella pneumophila ridl N-terminal domain lacking beta hairpin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OH6
- Type
- protein
- Length
- 468 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Interaptin
- UniProt
- G8UZ99
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Interaptin | protein | 232 | 63% helix, 0% strand | G8UZ99 |
| B | Interaptin | protein | 236 | 61% helix, 0% strand | G8UZ99 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 274 | 0.58 | 0.78 | 41 | empty |
| 2 | 187 | 0.52 | 0.78 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 878 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5OH6 · Legionella pneumophila RidL N-terminal domain lacking beta hairpin · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G8UZ99
- Elsewhere: RCSB PDB 5OH6 · PDBe 5OH6 · UniProt G8UZ99
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