Research workbench
Crystal structure of ruminiclostridium thermocellum beta-glucosidase a
Analyse Crystal structure of ruminiclostridium thermocellum beta-glucosidase a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OGZ
- Type
- protein
- Length
- 898 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glucosidase a
- EC
- 3.2.1.21
- UniProt
- P26208
- Ligands
- SO4
- Pockets
- 6 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Beta-glucosidase a (EC 3.2.1.21) | protein | 449 | 44% helix, 17% strand | P26208 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 324 | 0.73 | 0.85 | 43 | empty |
| 2 | 651 | 0.72 | 0.79 | 56 | empty |
| 3 | 628 | 0.72 | 0.79 | 60 | empty |
| 4 | 62 | 0.41 | 0.80 | 16 | empty |
| 5 | 94 | 0.34 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 615 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5OGZ · Crystal structure of Ruminiclostridium Thermocellum beta-Glucosidase A · the same entry in another collection · chain A against A, TM-score 1.00
- P26208 · AlphaFold monomer V2.0 prediction for beta-glucosidase a (P26208) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P26208
- Elsewhere: RCSB PDB 5OGZ · PDBe 5OGZ · UniProt P26208
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