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Crystal structure of a nucleotide sugar transporter

Analyse Crystal structure of a nucleotide sugar transporter in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OGE
Type: protein
Length: 2,417 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P40107

Structure

x-ray diffraction · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	299	—	P40107
B	—	protein	299	—	P40107
C	—	protein	302	—	P40107
D	—	protein	303	—	P40107
E	—	protein	304	—	P40107
F	—	protein	305	—	P40107
G	—	protein	306	—	P40107
H	—	protein	299	—	P40107

Ligands and binding sites

OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 12 copies · chains A, E, B, D, F, G

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OGE · Crystal structure of a nucleotide sugar transporter · the same entry in another collection · chain H against H, TM-score 1.00
P40107 · AlphaFold monomer V2.0 prediction for GDP-mannose transporter 1 (P40107) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P40107
Elsewhere: RCSB PDB 5OGE · PDBe 5OGE · UniProt P40107

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