Research workbench
Human cellular retinoic acid binding protein II (crabpii) with bound synthetic retinoid DC360.
Analyse Human cellular retinoic acid binding protein II (crabpii) with bound synthetic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OGB
- Type
- protein
- Length
- 135 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellular retinoic acid-binding protein 2
- UniProt
- P29373
- Ligands
- 9U5
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cellular retinoic acid-binding protein 2 | protein | 135 | 13% helix, 56% strand | P29373 |
Ligands and binding sites
- 9U5 · 4-[2-(4,4-dimethyl-1-propan-2-yl-quinolin-6-yl) ethynyl]benzoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.77 | 0.89 | 36 | 9U5 |
Compared structures
- 5OGB · Human Cellular Retinoic Acid Binding Protein II (CRABPII) with bound synthetic retinoid… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29373
- Elsewhere: RCSB PDB 5OGB · PDBe 5OGB · UniProt P29373
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