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Plla lectin, apo

Analyse Plla lectin, apo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OFZ
Type: protein
Length: 480 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q7N561
Pockets: 4 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Uncharacterized protein	protein	120	3% helix, 52% strand	Q7N561

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	367	0.68	0.81	37	empty
2	103	0.37	0.75	21	empty
3	111	0.36	0.74	19	empty
4	68	0.29	0.73	22	empty

Interfaces

5 interfaces between chains.

A–B · 1046 Å² buried · 17 hydrogen bonds · protein-protein
A–D · 764 Å² buried · 8 hydrogen bonds · protein-protein
A–C · 240 Å² buried · 0 hydrogen bonds · protein-protein
C–D · 199 Å² buried · 2 hydrogen bonds · protein-protein
B–D · 20 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5OFZ · PllA lectin, apo · the same entry in another collection · chain A against A, TM-score 1.00
Q7N561 · AlphaFold monomer V2.0 prediction for lectin a (Q7N561) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7N561
Elsewhere: RCSB PDB 5OFZ · PDBe 5OFZ · UniProt Q7N561

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