Research workbench
Crystal structure of the heterotrimeric prislx primase from S. solfataricus.
Analyse Crystal structure of the heterotrimeric prislx primase from S. solfataricus. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OF3
- Type
- protein
- Length
- 1,395 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q97Z83, Q9UWW1, Q97ZS7
- Ligands
- APC, MN, ZN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 319 | — | Q97Z83 |
| B | — | protein | 279 | — | Q9UWW1 |
| E | — | protein | 273 | — | Q9UWW1 |
| C | — | protein | 107 | — | Q97ZS7 |
| F | — | protein | 98 | — | Q97ZS7 |
Ligands and binding sites
- APC · Diphosphomethylphosphonic acid adenosyl ester · ligand · 4 copies · chains A, D, C, F
- MN · Manganese (II) ion · metal · 4 copies · chains A, D, C, F
- ZN · Zinc ion · metal · 2 copies · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OF3 · Crystal structure of the heterotrimeric PriSLX primase from S. solfataricus. · the same entry in another collection · chain F against F, TM-score 1.00
- Q97Z83 · AlphaFold monomer V2.0 prediction for DNA primase small subunit pris (Q97Z83) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q9UWW1 · AlphaFold monomer V2.0 prediction for DNA primase large subunit pril (Q9UWW1) · a predicted model of the same protein · chain E against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97Z83
- Every structure of UniProt Q9UWW1
- Every structure of UniProt Q97ZS7
- Elsewhere: RCSB PDB 5OF3 · PDBe 5OF3 · UniProt Q97Z83 · UniProt Q9UWW1 · UniProt Q97ZS7
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