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The structure of a glutathione synthetase like-effector (GSS22) from globodera pallida in apoform.
Analyse The structure of a glutathione synthetase like-effector (GSS22) from globodera… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OEV
- Type
- protein
- Length
- 1,693 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione synthetase-like effector 22 (gpa-GSS22-apo)
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 4 distinct chains · 42% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutathione synthetase-like effector 22 (gpa-GSS22-apo) | protein | 451 | 43% helix, 26% strand | — |
| B | Glutathione synthetase-like effector 22 (gpa-GSS22-apo) | protein | 397 | 42% helix, 26% strand | — |
| C | Glutathione synthetase-like effector 22 (gpa-GSS22-apo) | protein | 397 | 42% helix, 26% strand | — |
| D | Glutathione synthetase-like effector 22 (gpa-GSS22-apo) | protein | 448 | 43% helix, 26% strand | — |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.82 | 0.98 | 22 | empty |
| 2 | 837 | 0.75 | 0.79 | 102 | empty |
| 3 | 921 | 0.75 | 0.78 | 112 | empty |
| 4 | 164 | 0.73 | 0.90 | 28 | empty |
| 5 | 154 | 0.72 | 0.90 | 29 | empty |
Interfaces
6 interfaces between chains.
- A–C · 1440 Ų buried · 28 hydrogen bonds · protein-protein
- B–D · 1437 Ų buried · 27 hydrogen bonds · protein-protein
- A–D · 455 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 425 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 73 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5OEV · The structure of a glutathione synthetase like-effector (GSS22) from Globodera pallida in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5OEV · PDBe 5OEV
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