Research workbench
Structure of TRA1 subunit within the chromatin modifying complex saga
Analyse Structure of TRA1 subunit within the chromatin modifying complex saga in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OEJ
- Type
- protein
- Length
- 2,825 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRA1 subunit within the chromatin modifying complex saga
- UniProt
- F2QQ15
- Pockets
- 20 · best druggability 0.75
Structure
electron microscopy · 1 distinct chain · 68% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | TRA1 subunit within the chromatin modifying complex saga | protein | 2825 | 68% helix, 1% strand | F2QQ15 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 499 | 0.75 | 0.83 | 69 | empty |
| 2 | 1103 | 0.74 | 0.77 | 138 | empty |
| 3 | 534 | 0.73 | 0.81 | 72 | empty |
| 4 | 606 | 0.73 | 0.80 | 93 | empty |
| 5 | 1039 | 0.73 | 0.76 | 93 | empty |
Compared structures
- 5OEJ · Structure of Tra1 subunit within the chromatin modifying complex SAGA · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2QQ15
- Elsewhere: RCSB PDB 5OEJ · PDBe 5OEJ · UniProt F2QQ15
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