Research workbench
R. palustris RPA4515 with oxoadipate
Analyse R. palustris RPA4515 with oxoadipate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5OEI
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein family UPF0065:TAT pathway signal
- UniProt
- Q6N193
- Ligands
- OOG, SO4
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein family UPF0065:TAT pathway signal | protein | 299 | 44% helix, 21% strand | Q6N193 |
Ligands and binding sites
- OOG · 2-oxoadipic acid · ligand · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.72 | 0.98 | 23 | OOG |
| 2 | 60 | 0.45 | 0.83 | 20 | empty |
| 3 | 96 | 0.36 | 0.75 | 18 | empty |
Compared structures
- 5OEI · R. palustris Rpa4515 with oxoadipate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N193
- Elsewhere: RCSB PDB 5OEI · PDBe 5OEI · UniProt Q6N193
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