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Crystal structure of aspergillus fumigatus N-acetylphosphoglucosamine mutate S69A in complex with GLUCOSE1,6BISPHOSPHATE
Analyse Crystal structure of aspergillus fumigatus N-acetylphosphoglucosamine mutate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5O9X
- Type
- protein
- Length
- 541 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoacetylglucosamine mutase
- EC
- 5.4.2.3
- UniProt
- A0A0S7E9S6
- Ligands
- G16, CL
- Pockets
- 6 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoacetylglucosamine mutase (EC 5.4.2.3) | protein | 541 | 44% helix, 18% strand | A0A0S7E9S6 |
Ligands and binding sites
- G16 · 1,6-di-O-phosphono-alpha-D-glucopyranose · ligand · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 336 | 0.76 | 0.87 | 56 | G16, CL |
| 2 | 212 | 0.47 | 0.75 | 28 | empty |
| 3 | 148 | 0.45 | 0.76 | 21 | GOL |
| 4 | 107 | 0.44 | 0.78 | 16 | empty |
| 5 | 158 | 0.41 | 0.74 | 21 | empty |
Compared structures
- 5O9X · Crystal structure of Aspergillus fumigatus N-acetylphosphoglucosamine mutate S69A in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S7E9S6
- Elsewhere: RCSB PDB 5O9X · PDBe 5O9X · UniProt A0A0S7E9S6
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