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Crystal structure of transcription factor iib mvu mini-intein

Analyse Crystal structure of transcription factor iib mvu mini-intein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5O9I
Type: protein
Length: 347 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcription initiation factor IIB,TRANSCRIPTION initiation factor iib
UniProt: C9REA0
Pockets: 4 · best druggability 0.46

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcription initiation factor IIB,TRANSCRIPTION initiation factor iib	protein	171	8% helix, 51% strand	C9REA0
B	Transcription initiation factor IIB,TRANSCRIPTION initiation factor iib	protein	176	6% helix, 51% strand	C9REA0

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	190	0.46	0.75	22	empty
2	140	0.41	0.75	27	empty
3	55	0.33	0.77	14	empty
4	71	0.31	0.74	13	empty

Interfaces

1 interface between chains.

A–B · 494 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

5O9I · Crystal structure of transcription factor IIB Mvu mini-intein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9REA0
Elsewhere: RCSB PDB 5O9I · PDBe 5O9I · UniProt C9REA0

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