Research workbench

N. crassa TOM40 model based on cryo-EM structure of the tom core complex at 6.8 a

Analyse N. crassa TOM40 model based on cryo-EM structure of the tom core complex at 6.8… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5O8O
Type: protein
Length: 332 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mitochondrial import receptor subunit TOM40
UniProt: P24391
Pockets: 4 · best druggability 0.49

Structure

electron microscopy · 1 distinct chain · 13% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mitochondrial import receptor subunit TOM40	protein	332	13% helix, 53% strand	P24391

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	274	0.49	0.74	47	empty
2	187	0.49	0.76	35	empty
3	166	0.49	0.77	31	empty
4	62	0.29	0.74	23	empty

Compared structures

5O8O · N. crassa Tom40 model based on cryo-EM structure of the TOM core complex at 6.8 A · the same entry in another collection · chain A against A, TM-score 1.00
P24391 · AlphaFold monomer V2.0 prediction for mitochondrial import receptor subunit TOM40 (P24391) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24391
Elsewhere: RCSB PDB 5O8O · PDBe 5O8O · UniProt P24391

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.