Crystal structure of the BC1960 peptidoglycan N-acetylglucosamine deacetylase in complex with 4-naphthalen-1-yl-~{N}-oxidanyl-benzamide

Structure

x-ray diffraction · 2 distinct chains.

Ligands and binding sites

• 5YA · 4-naphthalen-1-yl-~{N}-oxidanyl-benzamide · ligand · 4 copies · chains A, B, C, D
• NA · Sodium ion · metal · 21 copies · chains A, B, C, D
• ZN · Zinc ion · metal · 4 copies · chains B, C, D
• SO4 · Sulfate ion · ion · 9 copies · chains A, B, C, D
• CL · Chloride ion · ion · 4 copies · chains A, B
• PEG · Di(hydroxyethyl)ether · additive · 11 copies · chains A, B, C, D
• PE3 · 3,6,9,12,15,18,21,24,27,30,33,36,39-tridecaoxahentetracontane-1,41-diol · additive · 2 copies · chains A, C, D
• DMS · Dimethyl sulfoxide · additive · 2 copies · chains A, B
• PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 5O6Y · Crystal structure of the Bc1960 peptidoglycan N-acetylglucosamine deacetylase in complex… · the same entry in another collection · chain A against A, TM-score 1.00
• Q81EK9 · AlphaFold monomer V2.0 prediction for peptidoglycan-N- acetylglucosamine deacetylase… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q81EK9
• Elsewhere: RCSB PDB 5O6Y · PDBe 5O6Y · UniProt Q81EK9