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The flagellin of pyrococcus furiosus

Analyse The flagellin of pyrococcus furiosus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5O4U
Type: protein
Length: 3,312 residues
Chains: 16
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flagellin
UniProt: A0A0B4ZYM1
Pockets: 20 · best druggability 0.89

Structure

electron microscopy · 1 distinct chain · 24% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Flagellin	protein	207	24% helix, 22% strand	A0A0B4ZYM1

Pockets

20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1126	0.89	0.91	162	empty
2	1167	0.88	0.90	134	empty
3	1098	0.86	0.87	127	empty
4	787	0.85	0.88	98	empty
5	570	0.82	0.88	66	empty

Interfaces

62 interfaces between chains.

I–K · 1784 Å² buried · 16 hydrogen bonds · protein-protein
D–M · 1757 Å² buried · 14 hydrogen bonds · protein-protein
G–N · 1757 Å² buried · 12 hydrogen bonds · protein-protein
L–N · 1741 Å² buried · 11 hydrogen bonds · protein-protein
K–P · 1739 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

5O4U · The flagellin of Pyrococcus furiosus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0B4ZYM1
Elsewhere: RCSB PDB 5O4U · PDBe 5O4U · UniProt A0A0B4ZYM1

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