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Deglycosylated nogo receptor with native disulfide structure 3

Analyse Deglycosylated nogo receptor with native disulfide structure 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5O0M
Type: protein
Length: 589 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Reticulon-4 receptor
UniProt: Q99PI8
Ligands: NAG

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Reticulon-4 receptor	protein	295	10% helix, 16% strand	Q99PI8
B	Reticulon-4 receptor	protein	294	10% helix, 16% strand	Q99PI8

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 10 disulfide, 5 glycan (disulfide, N-glycosylation).

Compared structures

5O0M · Deglycosylated Nogo Receptor with native disulfide structure 3 · the same entry in another collection · chain A against A, TM-score 1.00
Q99PI8 · AlphaFold monomer V2.0 prediction for reticulon-4 receptor (Q99PI8) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99PI8
Elsewhere: RCSB PDB 5O0M · PDBe 5O0M · UniProt Q99PI8

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