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Crystal structure of udp-glucose pyrophosphorylase G45Y mutant from leishmania major in complex with udp-glucose

Analyse Crystal structure of udp-glucose pyrophosphorylase G45Y mutant from leishmania… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NZJ
Type: protein
Length: 482 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-glucose pyrophosphorylase
EC: 2.7.7.9
UniProt: Q4QDU3
Ligands: UPG, SO4
Pockets: 3 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Udp-glucose pyrophosphorylase (EC 2.7.7.9)	protein	482	33% helix, 27% strand	Q4QDU3

Ligands and binding sites

UPG · Uridine-5'-diphosphate-glucose · ligand · chains A
SO4 · Sulfate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1016	0.78	0.80	98	UPG, EDO, SO4
2	112	0.40	0.75	27	empty
3	79	0.34	0.75	20	empty

Compared structures

5NZJ · Crystal structure of UDP-glucose pyrophosphorylase G45Y mutant from Leishmania major in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4QDU3
Elsewhere: RCSB PDB 5NZJ · PDBe 5NZJ · UniProt Q4QDU3

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