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High-resolution crystal structure of a snake venom metalloproteinase from taiwan habu

Analyse High-resolution crystal structure of a snake venom metalloproteinase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1KUF
Type: protein
Length: 201 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Metalloproteinase
EC: 3.4.24.44
UniProt: O57413
Ligands: CD
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Metalloproteinase (EC 3.4.24.44)	protein	201	41% helix, 16% strand	O57413

Ligands and binding sites

CD · Cadmium ion · metal · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	84	0.41	0.79	20	CD

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1KUF · High-resolution Crystal Structure of a Snake Venom Metalloproteinase from Taiwan Habu · the same entry in another collection · chain A against A, TM-score 1.00
O57413 · AlphaFold monomer V2.0 prediction for zinc METALLOPROTEINASE/DISINTEGRIN (O57413) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O57413
Elsewhere: RCSB PDB 1KUF · PDBe 1KUF · UniProt O57413

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