Research workbench

Anbu from hyphomicrobium sp. strain MC1 - sg: R32

Analyse Anbu from hyphomicrobium sp. strain MC1 - sg: R32 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NYP
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Anbu
UniProt: F8JB59
Ligands: NA, PO4
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Anbu	protein	213	33% helix, 27% strand	F8JB59

Ligands and binding sites

NA · Sodium ion · metal · chains A
PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.34	0.74	13	empty

Compared structures

5NYP · Anbu from Hyphomicrobium sp. strain MC1 - SG: R32 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F8JB59
Elsewhere: RCSB PDB 5NYP · PDBe 5NYP · UniProt F8JB59

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.