Research workbench
Porcine (sus scrofa) major histocompatibility complex, class I, with human BETA2 micro globulin, presenting dferegysl
Analyse Porcine (sus scrofa) major histocompatibility complex, class I, with human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NQ1
- Type
- protein
- Length
- 770 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B1PJV3, P61769
- Ligands
- SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 276 | — | B1PJV3 |
| B, E | — | protein | 100 | — | P61769 |
| C, F | — | protein | 9 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains D, E
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B, E
- GOL · Glycerol · additive · chains D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NQ1 · Porcine (Sus scrofa) Major Histocompatibility Complex, class I, with human beta2 micro… · the same entry in another collection · chain F against F, TM-score 1.00
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1PJV3
- Every structure of UniProt P61769
- Elsewhere: RCSB PDB 5NQ1 · PDBe 5NQ1 · UniProt B1PJV3 · UniProt P61769
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