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Structure of mojiang virus attachment glycoprotein

Analyse Structure of mojiang virus attachment glycoprotein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NOP
Type: protein
Length: 857 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Attachment glycoprotein
UniProt: W8TIR7
Ligands: CL
Pockets: 11 · best druggability 0.67

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Attachment glycoprotein	protein	423	5% helix, 50% strand	W8TIR7
B	Attachment glycoprotein	protein	434	6% helix, 48% strand	W8TIR7

Ligands and binding sites

CL · Chloride ion · ion · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	632	0.67	0.76	71	empty
2	510	0.65	0.77	52	empty
3	189	0.63	0.84	30	empty
4	206	0.61	0.82	28	empty
5	274	0.56	0.76	30	empty

Interfaces

1 interface between chains.

A–B · 498 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 13 disulfide (disulfide).

Compared structures

5NOP · Structure of Mojiang virus attachment glycoprotein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W8TIR7
Elsewhere: RCSB PDB 5NOP · PDBe 5NOP · UniProt W8TIR7

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