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Crystal structure of the escherichia COLI N-terminal domain of dsbd (ndsbd) without the cap-loop region

Analyse Crystal structure of the escherichia COLI N-terminal domain of dsbd (ndsbd)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NHI
Type: protein
Length: 224 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: THIOL:DISULFIDE interchange protein dsbd
EC: 1.8.1.8
UniProt: A0A0A0GNS2
Pockets: 2 · best druggability 0.39

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	THIOL:DISULFIDE interchange protein dsbd (EC 1.8.1.8)	protein	111	4% helix, 61% strand	A0A0A0GNS2
B	THIOL:DISULFIDE interchange protein dsbd (EC 1.8.1.8)	protein	113	4% helix, 58% strand	A0A0A0GNS2

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	93	0.39	0.76	17	empty
2	54	0.35	0.79	20	empty

Interfaces

1 interface between chains.

A–B · 440 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5NHI · Crystal structure of the Escherichia coli N-terminal domain of DsbD (nDsbD) without the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A0GNS2
Elsewhere: RCSB PDB 5NHI · PDBe 5NHI · UniProt A0A0A0GNS2

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