Research workbench
Structure of XCPQN012
Analyse Structure of XCPQN012 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NGI
- Type
- protein
- Length
- 425 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type II secretion system protein D
- UniProt
- A0A0A8RG33
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type II secretion system protein D | protein | 212 | 36% helix, 28% strand | A0A0A8RG33 |
| B | Type II secretion system protein D | protein | 213 | 36% helix, 28% strand | A0A0A8RG33 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 439 | 0.62 | 0.77 | 43 | empty |
| 2 | 110 | 0.57 | 0.85 | 24 | empty |
| 3 | 56 | 0.28 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1064 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5NGI · Structure of XcpQN012 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A8RG33
- Elsewhere: RCSB PDB 5NGI · PDBe 5NGI · UniProt A0A0A8RG33
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