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Structure of coxsackievirus B3 3C protease in complex with the alpha- ketoamide (S)-N-benzyl-3-((S)-2-cinnamamido-3-phenylpropanamido)-2- oxo-4-((S)-2-oxopyrrolidin-3-YL)BUTANAMIDE (cinnamoyl-phenylalanine- glnlactam-co-co-nh-benzyl)
Analyse Structure of coxsackievirus B3 3C protease in complex with the alpha- ketoamide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NFS
- Type
- protein
- Length
- 180 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Genome polyprotein
- UniProt
- Q5UEA2
- Ligands
- D03
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Genome polyprotein | protein | 180 | 13% helix, 55% strand | Q5UEA2 |
Ligands and binding sites
- D03 · (S)-N-benzyl-3-((S)-2-cinnamamido-3-phenylpropanamido)-2-oxo-4-((S)-2-oxopyrrolidin-3-yl)butanamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5NFS · Structure of coxsackievirus B3 3C protease in complex with the alpha-ketoamide… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5UEA2
- Elsewhere: RCSB PDB 5NFS · PDBe 5NFS · UniProt Q5UEA2
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