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The structure of endoglucanase from termite, nasutitermes takasagoensis, at pH 2.5.
Analyse The structure of endoglucanase from termite, nasutitermes takasagoensis, at pH… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KS8
- Type
- protein
- Length
- 433 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-B-1,4-glucanase
- EC
- 3.2.1.4
- UniProt
- O77044
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-B-1,4-glucanase (EC 3.2.1.4) | protein | 433 | 53% helix, 5% strand | O77044 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.55 | 0.78 | 22 | SO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1KS8 · The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 2.5. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O77044
- Elsewhere: RCSB PDB 1KS8 · PDBe 1KS8 · UniProt O77044
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