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The structure of aspergillus niger endoglucanase-palladium complex
Analyse The structure of aspergillus niger endoglucanase-palladium complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KS4
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase a
- EC
- 3.2.1.4
- UniProt
- O74705
- Ligands
- PD
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 60% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase a (EC 3.2.1.4) | protein | 223 | 7% helix, 60% strand | O74705 |
Ligands and binding sites
- PD · Palladium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 331 | 0.58 | 0.76 | 41 | PD |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1KS4 · The structure of Aspergillus niger endoglucanase-palladium complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O74705
- Elsewhere: RCSB PDB 1KS4 · PDBe 1KS4 · UniProt O74705
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