Research workbench
Crystal structure analysis of the rpia, structural genomics, protein EC1268.
Analyse Crystal structure analysis of the rpia, structural genomics, protein EC1268. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KS2
- Type
- protein
- Length
- 436 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein EC1268, rpia
- UniProt
- P0A7Z0
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Protein EC1268, rpia | protein | 218 | 33% helix, 28% strand | P0A7Z0 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 108 | 0.42 | 0.77 | 20 | empty |
| 2 | 95 | 0.40 | 0.78 | 24 | empty |
| 3 | 75 | 0.40 | 0.79 | 19 | empty |
| 4 | 129 | 0.39 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1171 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 1KS2 · Crystal Structure Analysis of the rpiA, Structural Genomics, protein EC1268. · the same entry in another collection · chain A against A, TM-score 1.00
- P0A7Z0 · AlphaFold monomer V2.0 prediction for ribose-5-phosphate isomerase a (P0A7Z0) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z0
- Elsewhere: RCSB PDB 1KS2 · PDBe 1KS2 · UniProt P0A7Z0
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