Research workbench
Crystal structure of the double mutant (CYS211SER/CYS292SER) 6- phospho-B-D-glucosidase from lactobacillus plantarum
Analyse Crystal structure of the double mutant (CYS211SER/CYS292SER) 6… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NAV
- Type
- protein
- Length
- 2,766 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-galactosidase
- EC
- 3.2.1.21
- UniProt
- F9ULH8
- Pockets
- 20 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Beta-galactosidase (EC 3.2.1.21) | protein | 461 | 45% helix, 17% strand | F9ULH8 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 606 | 0.77 | 0.83 | 49 | empty |
| 2 | 657 | 0.75 | 0.80 | 50 | empty |
| 3 | 551 | 0.74 | 0.82 | 39 | empty |
| 4 | 596 | 0.74 | 0.81 | 44 | empty |
| 5 | 598 | 0.74 | 0.81 | 36 | empty |
Interfaces
6 interfaces between chains.
- B–E · 734 Ų buried · 6 hydrogen bonds · protein-protein
- A–F · 730 Ų buried · 6 hydrogen bonds · protein-protein
- D–F · 362 Ų buried · 5 hydrogen bonds · protein-protein
- D–E · 357 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 142 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5NAV · Crystal structure of the double mutant (Cys211Ser/Cys292Ser) 6-phospho-b-D-glucosidase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F9ULH8
- Elsewhere: RCSB PDB 5NAV · PDBe 5NAV · UniProt F9ULH8
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