Research workbench
Lipoprotein-releasing system transmembrane protein lolc
Analyse Lipoprotein-releasing system transmembrane protein lolc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NAA
- Type
- protein
- Length
- 444 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipoprotein-releasing system transmembrane protein lolc
- UniProt
- P0ADC3
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipoprotein-releasing system transmembrane protein lolc | protein | 226 | 29% helix, 35% strand | P0ADC3 |
| B | Lipoprotein-releasing system transmembrane protein lolc | protein | 218 | 26% helix, 36% strand | P0ADC3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 440 | 0.73 | 0.83 | 40 | empty |
| 2 | 140 | 0.51 | 0.80 | 29 | empty |
| 3 | 133 | 0.50 | 0.80 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1861 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 5NAA · Lipoprotein-releasing system transmembrane protein LolC · the same entry in another collection · chain A against A, TM-score 1.00
- P0ADC3 · AlphaFold monomer V2.0 prediction for lipoprotein-releasing system transmembrane protein… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ADC3
- Elsewhere: RCSB PDB 5NAA · PDBe 5NAA · UniProt P0ADC3
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