Research workbench
Structure of the membrane integral lipoprotein N-acyltransferase lnt from P. aeruginosa
Analyse Structure of the membrane integral lipoprotein N-acyltransferase lnt from P.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5N6M
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apolipoprotein N-acyltransferase
- EC
- 2.3.1.-
- UniProt
- Q9ZI86
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apolipoprotein N-acyltransferase (EC 2.3.1.-) | protein | 491 | 49% helix, 16% strand | Q9ZI86 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 5 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 603 | 0.68 | 0.77 | 54 | empty |
| 2 | 100 | 0.37 | 0.74 | 22 | GOL, OLC |
Compared structures
- 5N6M · Structure of the membrane integral lipoprotein N-acyltransferase Lnt from P. aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ZI86 · AlphaFold monomer V2.0 prediction for apolipoprotein N-acyltransferase (Q9ZI86) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZI86
- Elsewhere: RCSB PDB 5N6M · PDBe 5N6M · UniProt Q9ZI86
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.