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Staphylococcus aureus cambialistic superoxide dismutase sodm

Analyse Staphylococcus aureus cambialistic superoxide dismutase sodm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5N57
Type: protein
Length: 396 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Superoxide dismutase
EC: 1.15.1.1
UniProt: W8UU58
Ligands: MN
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Superoxide dismutase (EC 1.15.1.1)	protein	198	57% helix, 13% strand	W8UU58

Ligands and binding sites

MN · Manganese (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	184	0.59	0.81	23	empty
2	202	0.57	0.80	21	empty
3	70	0.27	0.72	19	empty

Interfaces

1 interface between chains.

A–B · 1004 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5N57 · Staphylococcus aureus cambialistic superoxide dismutase SodM · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W8UU58
Elsewhere: RCSB PDB 5N57 · PDBe 5N57 · UniProt W8UU58

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