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Photorhabdus asymbiotica lectin (phl) in free form

Analyse Photorhabdus asymbiotica lectin (phl) in free form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MXE
Type: protein
Length: 345 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photorhabdus asymbiotica lectin phl
UniProt: C7BLE4
Ligands: NA, CL
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photorhabdus asymbiotica lectin phl	protein	345	0% helix, 46% strand	C7BLE4

Ligands and binding sites

NA · Sodium ion · metal · 4 copies · chains A
CL · Chloride ion · ion · 8 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	611	0.79	0.84	42	NA, CL

Compared structures

5MXE · Photorhabdus asymbiotica lectin (PHL) in free form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7BLE4
Elsewhere: RCSB PDB 5MXE · PDBe 5MXE · UniProt C7BLE4

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