Research workbench
Crystal structure of the E protein of the japanese encephalitis live attenuated vaccine virus
Analyse Crystal structure of the E protein of the japanese encephalitis live attenuated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MV2
- Type
- protein
- Length
- 410 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E protein
- UniProt
- Q8QQT1
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E protein | protein | 410 | 11% helix, 49% strand | Q8QQT1 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.44 | 0.78 | 18 | empty |
| 2 | 76 | 0.30 | 0.73 | 18 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 5MV2 · Crystal structure of the E protein of the Japanese encephalitis live attenuated vaccine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8QQT1
- Elsewhere: RCSB PDB 5MV2 · PDBe 5MV2 · UniProt Q8QQT1
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