Research workbench
Glycoside hydrolase BACINT_00347
Analyse Glycoside hydrolase BACINT_00347 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MUM
- Type
- protein
- Length
- 394 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BACINT_00347
- UniProt
- B3C613
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BACINT_00347 | protein | 394 | 4% helix, 44% strand | B3C613 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.52 | 0.78 | 34 | 1PE |
| 2 | 71 | 0.34 | 0.76 | 21 | empty |
Compared structures
- 5MUM · Glycoside Hydrolase BACINT_00347 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3C613
- Elsewhere: RCSB PDB 5MUM · PDBe 5MUM · UniProt B3C613
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