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Cowpea mosaic virus top component (cpmv-T) - naturally occurring empty particles

Analyse Cowpea mosaic virus top component (cpmv-T) - naturally occurring empty particles in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MSH
Type: protein
Length: 551 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cowpea mosaic virus small subunit; Cowpea mosaic virus large subunit
UniProt: P03599
Pockets: 5 · best druggability 0.47

Structure

electron microscopy · 2 distinct chains · 9% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cowpea mosaic virus small subunit	protein	182	7% helix, 47% strand	P03599
B	Cowpea mosaic virus large subunit	protein	369	10% helix, 40% strand	P03599

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.47	0.81	20	empty
2	158	0.46	0.76	30	empty
3	74	0.43	0.80	23	empty
4	51	0.29	0.75	11	empty
5	60	0.28	0.73	14	empty

Interfaces

1 interface between chains.

A–B · 1801 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

5MSH · Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03599
Elsewhere: RCSB PDB 5MSH · PDBe 5MSH · UniProt P03599

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