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Structure of black queen cell virus

Analyse Structure of black queen cell virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MQC
Type: protein
Length: 771 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VP1; VP3; VP2
UniProt: Q9J7C2
Pockets: 8 · best druggability 0.65

Structure

x-ray diffraction · 3 distinct chains · 8% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	VP1	protein	280	11% helix, 34% strand	Q9J7C2
C	VP3	protein	260	5% helix, 31% strand	Q9J7C2
B	VP2	protein	231	8% helix, 36% strand	Q9J7C2

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	226	0.65	0.83	38	empty
2	217	0.59	0.80	29	empty
3	234	0.47	0.74	34	empty
4	88	0.45	0.81	23	empty
5	77	0.44	0.81	18	empty

Interfaces

3 interfaces between chains.

A–C · 4737 Å² buried · 79 hydrogen bonds · protein-protein
A–B · 1396 Å² buried · 15 hydrogen bonds · protein-protein
C–B · 1242 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

5MQC · Structure of black queen cell virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9J7C2
Elsewhere: RCSB PDB 5MQC · PDBe 5MQC · UniProt Q9J7C2

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