Research workbench
Structure of aals-wt
Analyse Structure of aals-wt in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MPP
- Type
- protein
- Length
- 9,240 residues
- Chains
- 60
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 6,7-dimethyl-8-ribityllumazine synthase
- EC
- 2.5.1.78
- UniProt
- O66529
- Pockets
- 20 · best druggability 0.88
Structure
electron microscopy · 1 distinct chain · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x | 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) | protein | 154 | 44% helix, 21% strand | O66529 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1071 | 0.88 | 0.89 | 91 | empty |
| 2 | 1086 | 0.88 | 0.89 | 91 | empty |
| 3 | 1101 | 0.88 | 0.89 | 90 | empty |
| 4 | 1130 | 0.88 | 0.89 | 90 | empty |
| 5 | 1084 | 0.88 | 0.89 | 94 | empty |
Interfaces
210 interfaces between chains.
- M–h · 1502 Ų buried · 10 hydrogen bonds · protein-protein
- U–d · 1502 Ų buried · 10 hydrogen bonds · protein-protein
- 7–t · 1501 Ų buried · 10 hydrogen bonds · protein-protein
- E–a · 1501 Ų buried · 10 hydrogen bonds · protein-protein
- G–6 · 1500 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5MPP · Structure of AaLS-wt · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O66529
- Elsewhere: RCSB PDB 5MPP · PDBe 5MPP · UniProt O66529
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