Research workbench
Unstructured mamc magnetite-binding protein located between two helices.
Analyse Unstructured mamc magnetite-binding protein located between two helices. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MM3
- Type
- protein
- Length
- 723 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sugar ABC transporter substrate-binding PROTEIN,MAGNETOSOME protein MAMC,SUGAR ABC…
- UniProt
- A0A0F8QGU4, A0A0U5I168
- Ligands
- GLC
- Pockets
- 9 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sugar ABC transporter substrate-binding PROTEIN,MAGNETOSOME protein MAMC,SUGAR ABC transporter substrate-binding protein | protein | 371 | 42% helix, 20% strand | A0A0F8QGU4, A0A0U5I168 |
| B | Sugar ABC transporter substrate-binding PROTEIN,MAGNETOSOME protein MAMC,SUGAR ABC transporter substrate-binding protein | protein | 352 | 42% helix, 22% strand | A0A0F8QGU4, A0A0U5I168 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.81 | 0.83 | 80 | GLC |
| 2 | 309 | 0.69 | 0.83 | 34 | GLC |
| 3 | 246 | 0.53 | 0.76 | 31 | empty |
| 4 | 79 | 0.41 | 0.79 | 16 | empty |
| 5 | 68 | 0.40 | 0.79 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 724 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5MM3 · Unstructured MamC magnetite-binding protein located between two helices. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F8QGU4
- Every structure of UniProt A0A0U5I168
- Elsewhere: RCSB PDB 5MM3 · PDBe 5MM3 · UniProt A0A0F8QGU4 · UniProt A0A0U5I168
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